id: https://example.com/Peamagic name: Peamagic title: PeaMAGIC description: This schema describes a multi\-environment phenotypic and genotypic dataset for a pea (Pisum sativum) MAGIC population comprising 848 inbred lines derived from an 8\-founder crossing scheme. The population was genotyped using skim sequencing (Skim\-seq) to capture genome\-wide variation. Field phenotyping was conducted across multiple environments, including one location with three replicates in 2024 and three locations with two replicates each in 2025. Traits measured include days to flowering, days to maturity, lodging, plant height, seed protein concentration, seed starch concentration, and grain yield (kg/ha). The schema captures structured observations across genotypes, environments, and replicates, along with standardized trait definitions and measurement units. version: 0.0.0 in_language: en imports: - linkml:types prefixes: linkml: https://w3id.org/linkml/ classes: Peamagic: name: Peamagic title: PeaMAGIC description: This schema describes a multi\-environment phenotypic and genotypic dataset for a pea (Pisum sativum) MAGIC population comprising 848 inbred lines derived from an 8\-founder crossing scheme. The population was genotyped using skim sequencing (Skim\-seq) to capture genome\-wide variation. Field phenotyping was conducted across multiple environments, including one location with three replicates in 2024 and three locations with two replicates each in 2025. Traits measured include days to flowering, days to maturity, lodging, plant height, seed protein concentration, seed starch concentration, and grain yield (kg/ha). The schema captures structured observations across genotypes, environments, and replicates, along with standardized trait definitions and measurement units. keywords: RDF401 slots: - Environment_ID - Line_ID - Location - Rep - Study_ID - Trait_ID - Unit - Value - Year slot_usage: Environment_ID: name: Environment_ID rank: 1 slot_group: General Line_ID: name: Line_ID rank: 2 slot_group: General Location: name: Location rank: 3 slot_group: General Rep: name: Rep rank: 4 slot_group: General Study_ID: name: Study_ID rank: 5 slot_group: General Trait_ID: name: Trait_ID rank: 6 slot_group: General Unit: name: Unit rank: 7 slot_group: General Value: name: Value rank: 8 slot_group: General Year: name: Year rank: 9 slot_group: General Container: name: Container tree_root: true attributes: name: PeamagicData multivalued: true range: Peamagic inlined_as_list: true slots: Environment_ID: name: Environment_ID title: Environment Identifier range: WhitespaceMinimizedString description: Identifier for a unique year\-location combination Line_ID: name: Line_ID title: Line identifier range: WhitespaceMinimizedString description: Unique identifier for each inbred MAGIC line Location: name: Location title: Location range: WhitespaceMinimizedString description: Name of the field trial location Rep: name: Rep title: Replication range: decimal description: Replication number within the experimental design Study_ID: name: Study_ID title: Study Identifier range: WhitespaceMinimizedString description: Unique identifier for the study dataset Trait_ID: name: Trait_ID title: Trait identifier any_of: - range: WhitespaceMinimizedString - range: Trait_ID description: Identifier for the measured trait (e.g., DTF, DTM) Unit: name: Unit title: Measurement unit range: WhitespaceMinimizedString description: Unit of measurement corresponding to the trait value (e.g., days, cm, kg/ha) Value: name: Value title: Trait value range: decimal description: Observed or measured value for the specified trait Year: name: Year title: Year range: decimal description: Calendar year in which the field experiment was conducted enums: SettingsMenu: name: SettingsMenu title: Regular Expressions permissible_values: AllCaps: title: AllCaps description: Entries of any length with only capital letters AlphaText1-50: title: AlphaText1-50 description: Capital or lower case letters only, at least 1 character, and 50 characters max AlphaText0-50: title: AlphaText0-50 description: Capital or lower case letters only, 50 characters max FreeText0-50: title: FreeText0-50 description: Short text, 50 characters max FreeText0-250: title: FreeText0-250 description: Short text, 250 characters max FreeText0-800: title: FreeText0-800 description: Long text, 800 characters max FreeText0-4000: title: FreeText0-4000 description: Long text, 4000 characters max CanadianPostalCode: title: CanadianPostalCode description: Canadian postal codes (A1A 1A1) ZipCode: title: ZipCode description: USA Zip code EmailAddress: title: EmailAddress description: Email address URL: title: URL description: Secure (https) URL PhoneNumber: title: PhoneNumber description: Phone number with international and area code component. Latitude: title: Latitude description: Latitude in formats S30°15'45.678" or N12°30.999" Longitude: title: Longitude description: Longitude in formats E30°15'45.678" or W90°00.000" ISO_YYYY-MM-DD: title: ISO_YYYY-MM-DD description: year month day ISO_YYYYMMDD: title: ISO_YYYYMMDD ISO_YYYY-MM: title: ISO_YYYY-MM description: year month ISO_YYYY-Www: title: ISO_YYYY-Www description: year week (e.g. W01) ISO_YYYYWww: title: ISO_YYYYWww description: year week (e.g. W01) ISO_YYYY-DDD: title: ISO_YYYY-DDD description: Ordinal date (day number from the year) ISO_YYYYDDD: title: ISO_YYYYDDD description: Ordinal date (day number from the year) ISO_YYYY: title: ISO_YYYY description: year ISO_MM: title: ISO_MM description: month ISO_DD: title: ISO_DD description: day ISO_YYYY-MM-DDTHH.MM.SSZ: title: ISO_YYYY-MM-DDTHH:MM:SSZ description: Date and Time Combined (UTC) ISO_YYYY-MM-DDTHH.MM.SS-hh.mm: title: ISO_YYYY-MM-DDTHH:MM:SS±hh:mm description: Date and Time Combined (with Timezone Offset) ISO_PnYnMnDTnHnMnS: title: ISO_PnYnMnDTnHnMnS description: durations e.g. P3Y6M4DT12H30M5S ISO_HH.MM: title: ISO_HH:MM description: hour, minutes in 24 hour notation ISO_HH.MM.SS: title: ISO_HH:MM:SS description: hour, minutes, seconds in 24 hour notation SLASH_DD_MM_YYYY: title: DD/MM/YYYY description: day, month, year SLASH_DD_MM_YY: title: DD/MM/YY description: day, month, year SLASH_MM_DD_YYYY: title: MM/DD/YYYY description: month, day, year DDMMYYYY: title: DDMMYYYY description: day, month, year MMDDYYYY: title: MMDDYYYY description: month, day, year YYYYMMDD: title: YYYYMMDD description: year, month, day HH.MM.SS: title: HH:MM:SS description: hour, minutes, seconds 12 hour notation AM/PM H.MM_or_HH.MM: title: H:MM or HH:MM description: hour, minutes AM/PM Trait_ID: name: Trait_ID title: Trait_ID permissible_values: DTF: text: DTF title: Days to flowering DTM: text: DTM title: Days to maturity LDG: text: LDG title: Lodging PH: text: PH title: Plant height PROT: text: PROT title: Seed protein concentration STARCH: text: STARCH title: Seed starch concentration YLD: text: YLD title: Grain yield types: WhitespaceMinimizedString: name: WhitespaceMinimizedString typeof: string description: 'A string that has all whitespace trimmed off of beginning and end, and all internal whitespace segments reduced to single spaces. Whitespace includes x9 (tab), #xA (linefeed), and #xD (carriage return).' base: str uri: xsd:token settings: Title_Case: ((?<=\b)[^a-z\W]\w*?|[\W])+ UPPER_CASE: '[A-Z\W\d_]*' lower_case: '[a-z\W\d_]*' AllCaps: ^[A-Z]*$ AlphaText1-50: ^[A-Za-z]{1,50}$ AlphaText0-50: ^[A-Za-z]{0,50}$ FreeText0-50: ^.{0,50}$ FreeText0-250: ^.{0,250}$ FreeText0-800: ^.{0,800}$ FreeText0-4000: ^.{0,4000}$ CanadianPostalCode: ^[A-Z][0-9][A-Z]\s[0-9][A-Z][0-9]$ ZipCode: ^\d{5,6}(?:[-\s]\d{4})?$ EmailAddress: ^[a-zA-Z0-9_\.\+-]+@[a-zA-Z0-9-]+\.[a-zA-Z0-9-\.]+ URL: ^https?\:\/\/[a-zA-Z0-9\-\.]+\.[a-zA-Z]{2,}$ PhoneNumber: ^\+?\(?\d{2,4}\)?[\d\s-]{3,}$ Latitude: ^[NS]-?(?:[0-8]?\d|90)°(?:\d+(?:\.\d+)?)(?:'(\d+(?:\.\d+)?)")?$ Longitude: ^[WE]-?(?:[0-8]?\d|90)°(?:\d+(?:\.\d+)?)(?:'(\d+(?:\.\d+)?)")?$ ISO_YYYY-MM-DD: ^(\d{4})-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])$ ISO_YYYYMMDD: ^(\d{4})(0[1-9]|1[0-2])(0[1-9]|[1-2]\d|3[0-1])$ ISO_YYYY-MM: ^(\d{4})-(0[1-9]|1[0-2])$ ISO_YYYY-Www: ^(?:\d{4})-W(0[1-9]|[1-4][0-9]|5[0-3])$ ISO_YYYYWww: ^(?:\d{4})W(0[1-9]|[1-4][0-9]|5[0-3])$ ISO_YYYY-DDD: ^(?:\d{4})-(00[1-9]|0[1-9][0-9]|[1-2][0-9]{2}|3[0-5][0-9]|36[0-6])$ ISO_YYYYDDD: ^(?:\d{4})(00[1-9]|0[1-9][0-9]|[1-2][0-9]{2}|3[0-5][0-9]|36[0-6])$ ISO_YYYY: ^(\d{4})$ ISO_MM: ^(0[1-9]|1[0-2])$ ISO_DD: ^(0[1-9]|[1-2][0-9]|3[01])$ ISO_YYYY-MM-DDTHH.MM.SSZ: ^(\d{4})-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])T([01]\d|2[0-3]):([0-5]\d):([0-5]\d)Z$ ISO_YYYY-MM-DDTHH.MM.SS-hh.mm: ^(\d{4})-(0[1-9]|1[0-2])-(0[1-9]|[12]\d|3[01])T([01]\d|2[0-3]):([0-5]\d):([0-5]\\d)([+-][01]\\d:[0-5]\d)$ ISO_PnYnMnDTnHnMnS: ^P(?!$)((\d+Y)|(\d+.\d+Y)$)?((\d+M)|(\d+.\d+M)$)?((\d+W)|(\d+.\d+W)$)?((\d+D)|(\d+.\d+D)$)?(T(?=\d)((\d+H)|(\d+.\d+H)$)?((\d+M)|(\d+.\d+M)$)?(\d+(.\d+S)?)?)?$ ISO_HH.MM: ^([01]\d|2[0-3]):([0-5]\d)$ ISO_HH.MM.SS: ^([01]\d|2[0-3]):([0-5]\d):([0-5]\d)$ SLASH_DD_MM_YYYY: ^(0[1-9]|[12]\d|3[01])/(0[1-9]|1[0-2])/\d{4}$ SLASH_DD_MM_YY: ^(0[1-9]|[12]\d|3[01])/(0[1-9]|1[0-2])/\d{2}$ SLASH_MM_DD_YYYY: ^(0[1-9]|1[0-2])/(0[1-9]|[12]\d|3[01])/\d{4}$ DDMMYYYY: ^(0[1-9]|[12]\d|3[01])(0[1-9]|1[0-2])\d{4}$ MMDDYYYY: ^(0[1-9]|1[0-2])(0[1-9]|[12]\d|3[01])\d{4}$ YYYYMMDD: ^(\d{4})(0[1-9]|1[0-2])(0[1-9]|[1-2]\d|3[0-1])$ HH.MM.SS: ^(0?[1-9]|1[0-2]):[0-5][0-9]:[0-5][0-9] ?[APMapm]{2}$ H.MM_or_HH.MM: ^(0?[1-9]|1[0-2]):[0-5][0-9] ?[APMapm]{2}$